Laboratoire bioinformatique | UQAM
Groupe de recherche en biochimie du developpement et de l'adaptation des plantes | UQAM
Wheat MicroRNA Portal
Université du Québec à Montréal

Conserved microRNA consmRNA_3788

UCCACAGGCUUUCUUGAACGA 21nt
Associated miRBase1 families
miR396 
Predicted by our predictors: NO

Hit IDHit sequence
in miRBase dataset
Internal mismatchesExternal mismatchesExternal gapsTotal mismatchesPercent identity (Blast)E-value (Blast)Family
bdi-miR396b-5p
UCCACAGGCUUUCUUGAACUG
02021002e-05miR396
osa-miR396h
UCCACAGGCUUUCUUGAACGG
01011007e-06miR396
atr-miR396a
UCCACAGGCUUUCUUGAACAU
02021002e-05miR396
far-miR396
UCCACAGGCUUUCUUGAACUG
02021002e-05miR396
ata-miR396a-5p
UCCACAGGCUUUCUUGAACUG
02021002e-05miR396
osa-miR396d
UCCACAGGCUUUCUUGAACGG
01011007e-06miR396
bdi-miR396a-5p
UCCACAGGCUUUCUUGAACUG
02021002e-05miR396
ata-miR396d-5p
UCCACAGGCUUUCUUGAACUG
02021002e-05miR396
osa-miR396g
UCCACAGGCUUUCUUGAACGG
01011007e-06miR396
osa-miR396e-5p
UCCACAGGCUUUCUUGAACUG
02021002e-05miR396
ata-miR396b-5p
UCCACAGGCUUUCUUGAACUG
02021002e-05miR396

1Kozomara A, Griffiths-Jones S. (2014) miRBase: annotating high confidence microRNAs using deep sequencing data. NAR 2014 42:D68-D73 PMID: 21037258
 Mohamed Amine Remita, Etienne Lord   Made with JQuery, Angular.js, Bootstrap, D3, NVD3 and jqplot