Laboratoire bioinformatique | UQAM
Groupe de recherche en biochimie du developpement et de l'adaptation des plantes | UQAM
Wheat MicroRNA Portal
Université du Québec à Montréal

Conserved microRNA consmRNA_3803

GGAAUCGUGAUGAUGCUGCAG 21nt
Associated miRBase1 families
miR172 
Predicted by our predictors: NO

Hit IDHit sequence
in miRBase dataset
Internal mismatchesExternal mismatchesExternal gapsTotal mismatchesPercent identity (Blast)E-value (Blast)Family
ptc-miR172g-3p
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
cme-miR172e
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172
bra-miR172d-3p
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
aqc-miR172b
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
mtr-miR172a
AGAAUCCUGAUGAUGCUGCAG
1102950.0003miR172
osa-miR172b
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
mdm-miR172m
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172
ath-miR172c
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172
ptc-miR172h-3p
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
mdm-miR172o
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172
ptc-miR172e
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
sbi-miR172b
GGAAUCUUGAUGAUGCUGCA
1012950.0003miR172
bna-miR172c
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
ath-miR172e-3p
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
mdm-miR172j
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
aly-miR172c-3p
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172
rco-miR172
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
lus-miR172g
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
mdm-miR172l
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
vvi-miR172c
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
tcc-miR172a
GGAAUCUUGAUGAUGCUGCA
1012950.0003miR172
cme-miR172d
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
ath-miR172d-3p
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172
bdi-miR172d
AGAAUCCUGAUGAUGCUGCAG
1102950.0003miR172
lus-miR172e
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
stu-miR172d-3p
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
lja-miR172a
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172
csi-miR172c
UGGAAUCUUGAUGAUGCUGCAG
101295.249e-05miR172
mes-miR172e
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
bra-miR172c-3p
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172
gma-miR172l
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
cme-miR172a
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
ghr-miR172
AGAAUCCUGAUGAUGCUGCAG
1102950.0003miR172
bdi-miR172b
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
lus-miR172i
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
ata-miR172c-3p
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
gma-miR172i-3p
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
bna-miR172b
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
aly-miR172f-3p
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172
mdm-miR172i
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
gma-miR172c
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
aly-miR172d-3p
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172
mes-miR172f
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
mdm-miR172n
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172
ppe-miR172c
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
ptc-miR172d
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
tcc-miR172c
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
mdm-miR172k
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
atr-miR172
GGAAUCUUGAUGAUGCUGCA
1012950.0003miR172
bna-miR172d
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172
ppe-miR172d
GGAAUCUUGAUGAUGCUGCAG
100195.249e-05miR172
zma-miR172e
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
nta-miR172j
GGAAUCUUGAUGAUGCUGCAU
1102950.0003miR172
nta-miR172a
AGAAUCUUGAUGAUGCUGCAG
1102950.0003miR172

1Kozomara A, Griffiths-Jones S. (2014) miRBase: annotating high confidence microRNAs using deep sequencing data. NAR 2014 42:D68-D73 PMID: 21037258
 Mohamed Amine Remita, Etienne Lord   Made with JQuery, Angular.js, Bootstrap, D3, NVD3 and jqplot