Laboratoire bioinformatique | UQAM
Groupe de recherche en biochimie du developpement et de l'adaptation des plantes | UQAM
Wheat MicroRNA Portal
Université du Québec à Montréal

Conserved microRNA consmRNA_4680

UGAUUGAGCCGUGCCAAUAUCU 22nt
Associated miRBase1 families
miR171 miR170 
Predicted by our predictors: NO

Hit IDHit sequence
in miRBase dataset
Internal mismatchesExternal mismatchesExternal gapsTotal mismatchesPercent identity (Blast)E-value (Blast)Family
zma-miR171j-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
lus-miR171e
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ptc-miR171g-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
hvu-miR171-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ppe-miR171g
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
mes-miR171i
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
bdi-miR171a
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
pde-miR171
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
bra-miR171e
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
htu-miR171b
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ppe-miR171c
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
aqc-miR171d
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
bdi-miR171d-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
gma-miR171f
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
mtr-miR171d
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
tcc-miR171g
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
aqc-miR171b
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ath-miR170-3p
UGAUUGAGCCGUGUCAAUAUC
101295.240.0001miR170
osa-miR171c-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
gma-miR171u
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
tcc-miR171d
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
cpa-miR171c
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
cpa-miR171a
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
aly-miR170-3p
UGAUUGAGCCGUGUCAAUAUC
101295.240.0001miR170
stu-miR171a-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
bna-miR171f
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
rco-miR171f
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
cpa-miR171d
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
gma-miR171j-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ptc-miR171i
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
osa-miR171a
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
rco-miR171c
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
zma-miR171i-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
htu-miR171c
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
vvi-miR171j
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
zma-miR171n-3p
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
vvi-miR171a
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
vvi-miR171c
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
bdi-miR171e
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
cme-miR171c
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
far-miR171
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
osa-miR171b
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ptc-miR171h-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
osa-miR171f-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
rco-miR171e
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
lus-miR171c
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
vvi-miR171d
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
zma-miR171c-3p
UGACUGAGCCGUGCCAAUAUC
101295.240.0001miR171
mdm-miR171c
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
mdm-miR171e
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
sbi-miR171k
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
tcc-miR171e
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ata-miR171d-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ath-miR171a-3p
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
bdi-miR171b
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
sbi-miR171g
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
lus-miR171b
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
gma-miR171e
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ppe-miR171f
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
tae-miR171a
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
osa-miR171e-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
zma-miR171e-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ata-miR171b-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
crt-miR171
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
bna-miR171g
UGAUUGAGCCGCGCCAAUAUCU
100195.453e-05miR171
mdm-miR171g
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
sbi-miR171a
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
mes-miR171g
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
stu-miR171c-3p
UGAUUGAGCCGUGUCAAUAUC
101295.240.0001miR171
gma-miR171g
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
stu-miR171e
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
zma-miR171d-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
tcc-miR171f
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
mtr-miR171a
UGAUUGAGUCGUGCCAAUAUC
101295.240.0001miR171
mes-miR171h
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
mes-miR171k
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
sbi-miR171i
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
sly-miR171a
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ppe-miR171a
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
cme-miR171a
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
atr-miR171c
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
bdi-miR171c-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
cme-miR171e
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
hpa-miR171a
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
lja-miR171a
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
cme-miR171f
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
sbi-miR171j
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
aly-miR171a-3p
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
cme-miR171g
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
osa-miR171d-3p
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
cpa-miR171b
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ptc-miR171e
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
tcc-miR171h
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
atr-miR171a
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
ptc-miR171f
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
vvi-miR171e
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
mdm-miR171d
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
tcc-miR171a
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
htu-miR171a
UGAUUGAGCCGUGCCAAUAU
00221008e-06miR171
rco-miR171d
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
mdm-miR171h
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
aqc-miR171a
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
nta-miR171c
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
sbi-miR171b
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
mes-miR171j
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
ccl-miR171
UGAUUGAGCCGCGCCAAUAUC
101295.240.0001miR171
vvi-miR171i
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171
mtr-miR171c
UGAUUGAGCCGUGCCAAUAUU
01121008e-06miR171
sbi-miR171d
UGAUUGAGCCGUGCCAAUAUC
00111002e-06miR171

1Kozomara A, Griffiths-Jones S. (2014) miRBase: annotating high confidence microRNAs using deep sequencing data. NAR 2014 42:D68-D73 PMID: 21037258
 Mohamed Amine Remita, Etienne Lord   Made with JQuery, Angular.js, Bootstrap, D3, NVD3 and jqplot