Laboratoire bioinformatique | UQAM
Groupe de recherche en biochimie du developpement et de l'adaptation des plantes | UQAM
Wheat MicroRNA Portal
Université du Québec à Montréal

MicroRNA Finder

Use MicroRNA Finder to search homologous microRNAs in different databases such as miRBase1 and Agharbaoui et al (2015)2. MicroRNA Finder is not species-specific tool. It accepts microRNAs and smallRNAs sequences from other species.

BLAST 3 is used with default parameters.

Note: The maximum number of submitted sequences is limited to 1000.
Input format
The sequences must be in Fasta format :
>ID seq1
>ID seq2
1 Kozomara A and Griffiths-Jones S. (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39(Database issue):D152-7.
2 Agharbaoui Z., Leclercq M., Remita M.A., Badawi M.A., Lord E., Houde M., Danyluk J., Diallo A.B., and Sarhan F. An integrative approach to identify hexaploid wheat miRNAome associated with development and tolerance to abiotic stress  BMC genomics 16.1 (2015): 339. 
3 Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215:403-410. PMID: 2231712
3 Camacho C., Coulouris G., Avagyan V., Ma N., Papadopoulos J., Bealer K., & Madden T.L. (2008) BLAST+: architecture and applications. BMC Bioinformatics 10:421. PMID: 20003500
 Amine M. Remita, Etienne Lord   Made with JQuery, Angular.js, Bootstrap, D3, NVD3 and jqplot